I have moved to the NYU Tandon School of Engineering link


James Fishbaugh

Scientific Computing and Imaging Institute
University of Utah

Email:
jfishbau at sci dot utah dot edu
Office:
WEB 4720

I currently work as a postdoc at the Scientific Computing and Imaging Institute for Dr. Guido Gerig.

Education

Ph.D. in Computing: Image Analysis 2008 - 2014
University of Utah

M.S. in Computer Science 2006 - 2008
University of Montana

B.S. in Computer Science 2002 - 2006
University of Montana

Publications

Fishbaugh, J., Durrleman, S., Prastawa, M., Gerig, G. Geodesic shape regression with multiple geometries and sparse parameters. Medical Image Analysis. Vol 39. pp. 1-17. (2017)

Hong, S., Fishbaugh, J., Rezanejad, M., Siddiqi, K., Johnson, H., Paulsen, J., Kim, EY., Gerig, G. Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis. SPIE Medical Imaging 2017: Image Processing. (2017) (Oral presentation by Sungmin Hong)

Fishbaugh, J., Paniagua, B., Boen, V., Cevidanes, L.H., Gerig, G. Continuous 4D shape analysis of mandibular changes. Meeting of the International Association for Dental Research (IADR). (2017) (Oral presentation by Beatriz Paniagua)

Gerig, G., Fishbaugh, J., Sadeghi, N. Longitudinal modeling of appearance and shape and its potential for clinical use. Medical Image Analysis. Vol 33. pp 114-121. (2016)

Muralidharan, P., Fishbaugh, J., Kim, EY., Johnson, H., Paulsen, J., Gerig, G., Fletcher, P.T. Bayesian covariate selection in mixed-effects models for longitudinal shape analysis. IEEE International Symposium on Biomedical Imaging (ISBI '16). pp. 656-659. (2016)

Fishbaugh, J., Gerig, G.
Spatiotemporal modeling of dynamic facial expressions. In Proceedings of Shape Symposium. pp. 3. Delemont, Switzerland. (2015) (Oral presentation)

Muralidharan, P., Fishbaugh, J., Johnson, H., Durrleman, S., Paulsen, J., Gerig, G., Fletcher, P.T. Diffeomorphic shape trajectories for improved longitudinal segmentation and statistics. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '14). Vol 8675. (2014)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic regression of image and shape data for improved modeling of 4D trajectories. IEEE International Symposium on Biomedical Imaging (ISBI '14). pp. 385-388. (2014)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic image regression with a sparse parameterization of diffeomorphisms. Geometric Science of Information (GSI '13). LNCS vol 8085, pp. 95-102. (2013) (Oral presentation)

Fishbaugh, J., Prastawa, M., Gerig, G., Durrleman, S. Geodesic shape regression in the framework of currents. Proc. of Information Processing in Medical Imaging (IPMI '13). Vol 23, pp. 718-729. (2013)

Paniagua, B., Emodi, O., Hill, J., Fishbaugh, J., Pimenta, L., Aylward, S., Andinet, E., Gerig, G., Gilmore, J., Van Aalst, J., Styner, M. 3D of brain shape and volume after cranial vault remodeling surgery for craniosynostosis correction in infants. SPIE Medical Imaging 2013: Biomedical Applications in Molecular, Structural, and Functional Imaging. Vol 8672. (2013)

Fishbaugh, J., Prastawa, M., Durrleman, S., Piven, J., Gerig, G. Analysis of longitudinal shape variability via subject specific growth modeling. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '12). Vol 7510, pp. 731-738. (2012) (Oral presentation)

Fishbaugh, J., Durrleman, S., Piven, J., Gerig, G. A framework for longitudinal data analysis via shape regression. SPIE Medical Imaging 2012: Image Processing. Vol. 8314. (2012)

Fishbaugh, J., Durrleman, S., Gerig, G. Estimation of smooth growth trajectories with controlled acceleration from time series shape data. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '11). Vol 6892, pp. 401-408. (2011)


Misc

Fishbaugh, J., Gerig, G. 4D shape modeling of medical images and anatomical shapes. Poster presented as part of the NYU Postdoctoral Interdisciplinary Symposium. New York University. 14 November 2016. (Outstanding poster award)

PhD thesis

Fishbaugh, J. Spatiotemporal modeling of anatomical shape complexes. The University of Utah. (2015)

Master's thesis

Fishbaugh, J. Development of a higher-order ice sheet model using a rescaled coordinate system. The University of Montana. (2008)

Fishbaugh, J., Johnson, J. Development of a higher-order ice sheet model using a rescaled coordinate system. Poster presented as part of the Graduate Student and Faculty Research Conference. University of Montana. 5 April 2008. (Outstanding poster award)


Last Updated: March 31, 2015