Samuel Gerber
Visiting Assistant Professor
Mathematics, Duke University

home - publications - research - software

Journals

Regularization Free Princpal Curve Estimation
Samuel Gerber, Ross Whitaker, Journal of Machine Learning Research, to appear, 2012
[pdf]

Uncertainty Visualization without a Mean
Kristi Potter, Samuel Gerber, Erik Anderson, Visualization Viewpoints, 2012


Data Analysis with the Morse-Smale Complex: The msr Package for R
Samuel Gerber, Kristin Potter, Journal of Statistical Software, July 2012
[pdf][www]

Morse-Smale Regression
Samuel Gerber, Oliver Ruebel Peer-Timo Bremer, Valerio Pascucci, Ross Whitaker, Journal of Computational and Graphical Statistics, to appear
[pdf][supplemental material][www]

Visual Exploration of High Dimensional Scalar Functions
Samuel Gerber, Peer-Timo Bremer, Valerio Pascucci, Ross Whitaker, IEEE Transactions on Visualization and Computer Graphics, Proceedings of VIS 2010
[pdf]

Manifold Modeling for Brain Population Analysis (Best Paper Award)
Samuel Gerber, Tolga Tasdizen, Thomas P Fletcher, Sarang Joshi, Ross Whitaker, Medical Image Analysis, Volume 14, Issue 5,October 2010, Pages 643-653
[pdf]

Conferences

Fast Shape-Based Nearest-Neighbor Search for Brain MRIs Using Hierarchical Feature Matching
Peihong Zhu, Suyash Awate, Samuel Gerber, Ross Whitaker, Medical Image Computing and Computer-Assisted Intervention (MICCAI 2011)
[pdf]

Learning Multiple Tasks using Manifold Regularization
Arvind Agarwal, Hal Daume III, Samuel Gerber, Advances in Neural Information Processing Systems 23 (NIPS 2010)
[pdf]

On the Manifold Structure of the Space of Brain Images
Samuel Gerber, Tolga Tasdizen, Sarang Joshi, Ross Whitaker, In Proceedings of the 2009 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2009)
[pdf]

Dimensionality Reduction and Principal Surfaces via Kernel Map Manifolds
Samuel Gerber, Tolga Tasdizen, Ross Whitaker In Proceedings of the 2009 International Conference on Computer Vison (ICCV 2009)
[pdf]

A Variational Image-Based Approach to the Correction of Susceptibility Artifacts in the Alignment of Diffusion Weighted and Structural MRI
Ran Tao, P. Thomas Fletcher, Samuel Gerber, Ross T. Whitaker Information Processing in Medical Imaging (IPMI 2009)
[www]

Variational Shape Detection in Microscope Images Based on Joint Shape and Image Feature Statistics, Matthias Fuchs, Samuel Gerber, In Proceedings of the IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis (MMBIA 2008)
[pdf]

Robust Non-linear Dimensionality Reduction using Successive 1-Dimensional Laplacian Eigenmaps
[Updated 2011, with a correction pointed out by Naoki Saito from UC Davis]
Samuel Gerber, Tolga Tasdizen, Ross Whitaker, In Proceedings of the 2007 International Conference on Machine Learning (ICML 2007), pp. 281--288. 2007
[pdf, code]

Others

Boolean Operators for Java3D
Samuel Gerber, Technical Report University of Applied Sciences Northwest Switzerland
[pdf]

Boolean Operators for NURBS
Samuel Gerber, Technical Report University of Applied Sciences Northwest Switzerland
[pdf]

3d Postprocessor
Samuel Gerber, Technical Report University of Applied Sciences Northwest Switzerland
[pdf]

november 2011