James Fishbaugh

I am a fourth year P.h.D student interested in medical image processing and numerical methods. Before coming to Utah, I completed a Master's degree in computer science at the University of Montana .

I currently work as a graduate research assistant at the Scientific Computing and Imaging Institute for Dr. Guido Gerig .

Spring 2010
BIOEN 6500 - Mathematics of Imaging
CS 7960 - Advanced Image Processing
CS 7938 - Medical Imaging

Fall 2009
CS 6350 - Machine Learning
CS 6968 - 3D Computer Vision
CS 7938 - Medical Imaging

Spring 2009
CS 6220 - Advanced Scientific Computing II
CS 6360 - Virtual Reality
CS 6620 - Advanced Computer Graphics II: Ray Tracing
CS 6640 - Image Processing

Fall 2008
CS 6210 - Advanced Scientific Computing I
CS 6630 - Scientific Visualization
CS 6967 - Physical Simulation for Computer Animation

Projects

Mathematics of Imaging
Exploration of Procrustes analysis, Frechet mean, PCA, and PGA

Advanced Image Processing
Blob detection by scale-space filtering
Nonlinear scale-space by anisotropic diffusion
Contour description by elliptic harmonics
Active shape models
Snakes: Deformable contour segmentation
Normalized graph cuts – Graph-based image segmentation

Image Processing
Connected components analysis
Contrast adjustment
Image homologies and mosaicing
Image mosaicing
Feature and object detection

Simulation and modeling
Particle system
Deformable bodies
Fluid simulation
Rigid bodies

ISIS
Interactive System for Ice Sheet Modeling

Publications

Fishbaugh, J., Durrleman, S., Gerig, G. A framework for longitudinal data analysis via shape regression . SPIE Medical Imaging 2012: Image Processing. Vol. 8314. (To appear)

Fishbaugh, J., Durrleman, S., Gerig, G. Estimation of Smooth Growth Trajectories with Controlled Acceleration from Time Series Shape Data. Proc. of Medical Image Computing and Computer Assisted Intervention (MICCAI '11). September 2011.

Master's thesis
Fishbaugh, J. Development of a Higher-Order Ice Sheet Model Using a Rescaled Coordinate System . The University of Montana. 2008.

Misc

Fishbaugh, J. Development of a Higher-Order Ice Sheet Model Using a Rescaled Coordinate System. Poster presented as part of the Graduate Student and Faculty Research Conference. University of Montana. 5 April 2008. (Outstanding poster award)

Last Updated: October 5, 2011